Figure 5A
This folder contains code for generating pseudo temporal tree

Figure 5B
This folder contains code and raw pathway scores from lung cancer data which are used for differential pathway analysis among TS and Adh cells. 

Figure 5C
This folder contains code for plotting correlation heatmap among pathways for TS and Adh cells. User will require pheatmap from R to plot heatmaps.

Figure 5D
This folder contains code to obtain correlation values between Wnt pathway and stemness for TS and Adh cells

Figure 5E
This folder contains code for calculating differential co-occurrence analysis in case of TS and Adh cells for replicating glycolysis reults.