Description

This folder contains data and codes used for comparison of UniPath with PAGODA, AUCell and GSVA for cell type detection.

Requirements

R version greater than 3.6

1.UniPath
2.AUCell
3.GSVA
4.scde
5.GSVA

Usage
These scripts will take two inputs
1. Expression Matrix
2. Cell type specific marker file

UniPath takes fpkm data as an input and other tools AUCell, GSVA and PAGODA will take count data as an input. User can direcly run these scripts ensuring all the input data is present in the same folder

Ouput
Barplots depicting percentage of correct cell type