Check Enhancer Status

About Check Enhancer

The Check Enhancer tool allows you to analyze your own BED file against the ePerturbDB database. By uploading your file, you can determine which of your genomic regions correspond to known enhancers in our database.

The tool provides a summary of overlapping enhancers, a breakdown by tissue/cell type, and downloadable results for further analysis. Please ensure your BED file is based on the hg38 genome assembly.

System Prerequisites Check
Python: Python 3.10.16
pandas: pandas 2.2.3
pybedtools: pybedtools 0.10.0
Database file: Found
Uploads directory: Writable
Results directory: Writable
Please upload a BED file based on hg38 genome assembly.
Download Sample BED File