The following datasets were used in the evaluation of the NIRD tool. Click the links to download them directly.
| Dataset Name | Description | Download |
|---|---|---|
| DREAM5-net1 | DREAM Challenge Data - Network-1 (in silico) | Download |
| DREAM5-net1 Gold Standard | Benchmarking data for DREAM5-net1 dataset | Download |
| DREAM5-net1 Transcription Factors | List of Transcription Factors of DREAM5-net1 dataset | Download |
| DREAM5-net2 | DREAM Challenge Data - Network-2 (S. aureus) | Download |
| DREAM5-net2 Gold Standard | Benchmarking data for DREAM5-net2 dataset | Download |
| DREAM5-net2 Transcription Factors | List of Transcription Factors of DREAM5-net2 dataset | Download |
| DREAM5-net3 | DREAM Challenge Data - Network-3 (E. coli) | Download |
| DREAM5-net3 Gold Standard | Benchmarking data for DREAM5-net3 dataset | Download |
| DREAM5-net3 Transcription Factors | List of Transcription Factors of DREAM5-net3 dataset | Download |
| DREAM5-net4 | DREAM Challenge Data - Network-4 (S. cerevisiae) | Download |
| DREAM5-net4 Gold Standard | Benchmarking data for DREAM5-net4 dataset | Download |
| DREAM5-net4 Transcription Factors | List of Transcription Factors of DREAM5-net4 dataset | Download |
| mESC-DropSeq | Single-cell RNA-seq dataset using Drop-seq protocol | Download |
| mESC-SmartSeq | Single-cell RNA-seq dataset using Smart-seq protocol | Download |
| mESC Gold Standard Data | Benchmarking data for mESC inferred networks | Download |
| mESC Gold Standard Literature Data | Benchmarking literature data for mESC inferred networks | Download |
| Pancreas Old Beta | Single-cell transcriptome profile of human pancreas of old individuals | Download |
| Pancreas Young Beta | Single-cell transcriptome profile of human pancreas of young individuals | Download |
| Human Knee Cartilage - Control HTC | Gene expression data from healthy human knee cartilage tissue | Download |
| Human Knee Cartilage - Osteoarthritis HTC | Gene expression data from diseased human knee cartilage tissue | Download |
| Human Knee Cartilage - Control preHTC | Gene expression data from healthy human knee cartilage tissue | Download |
| Human Knee Cartilage - Osteoarthritis preHTC | Gene expression data from diseased human knee cartilage tissue | Download |
| hESC - 0th hr time course profile | hESC single cell time course expression counts at 0th hour | Download |
| hESC - 12th hr time course profile | hESC single cell time course expression counts at 12th hour | Download |
| hESC - 0th hr Transcription Velocity | 0th hr transcription velocity of hESC single cell data | Download |
| hESC - 12th hr Transcription Velocity | 12th hr transcription velocity of hESC single cell data | Download |